Category Archives: Conservation of Freshwater Fishes

Freshwater fishes are among the most imperiled groups globally with rates of decline comparable to declines in tropical rainforest species. Research in the PoeschLab focuses on developing a better understanding of the mechanisms for the decline of freshwater organisms. This research has four main themes, including: 1) threats to freshwater species at risk, 2) stream augmentation and hydrologic alteration, 3) climate change impacts to freshwater fishes, and 4) the spread and impact of invasive species. To achieve our research goals we utilize a variety of expertise in the PoeschLab and the University of Alberta. This includes expertise in: movement ecology and telemetry, assessing foodwebs using stable isotope analysis, population genetics and environmental DNA (eDNA) and morphology and swim performance.

Veilleux, H., McPherson, M.*, Cott, P., Poesch, M., S., Glover, C., and G. Goss. (In Press) Environmental DNA as a tool to detect Arctic grayling and their habitat preferences in the Northwest Territories, Canada. Arctic Science.

Abstract: 

Environmental DNA (eDNA) assays represent a non-invasive approach for biomonitoring. To assess Arctic grayling (Thymallus arcticus) populations in the Little Nahanni watershed of Northwest Territories (NWT), Canada, an eDNA assay that has been previously validated for use in fish of the Beringia lineage was used in conjunction with traditional survey methods (i.e., electrofishing). Forty-six 100-metre reaches of streams were assessed in August 2015. The assay successfully detected Arctic grayling of the Nahanni lineage, with an eDNA signal recorded at each of the 17 sites in which Arctic grayling were observed by traditional fish surveys, but also at 3 of the 29 sites where Arctic grayling were not observed. The presence of eDNA was related to habitat metrics via Random Forest and correlation analyses. Riffles and water temperature were identified as being predictive of Arctic grayling eDNA abundance; however, no significant relationship between eDNA abundance and biomass proxies (fish abundance and fork length metrics) could be established. The high congruence between traditional approaches and eDNA surveys suggests adoption of the latter method will enhance the temporal and spatial acuity of biomonitoring, thereby improving field assessment of Arctic grayling populations and contributing towards more effective conservation management of this species.

Citation: Veilleux, H., McPherson, M., Cott, P., Poesch, M., S., Glover, C., and G. Goss. (In Press) Environmental DNA as a tool to detect Arctic grayling and their habitat preferences in the Northwest Territories, Canada. Arctic Science.

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McPherson, M.*, Lewis, J.B., Cott, P.B., Baker, L.F., Mochnacz, N.J. Swanson, H.K., and S. Poesch. (2023) Habitat use by fluvial Arctic Grayling (Thymallus arcticus) across life stages in northern mountain streams. Environmental Biology of Fishes 106: 1001-1020.

*Lab members: Morag McPherson and Mark Poesch. Check out opportunities in the lab!

Theis, S.*, Cartwright, L., Chreston, A., Coey, B., Graham, B., Little, D., Poesch, M. S., Portiss, R., Scott, R., Wallace, A., and J. L. W. Ruppert. (In Press) Balancing sampling effort against costs for nearshore fish communities in Toronto waterfront, Lake Ontario. Fisheries Management and Ecology.

Abstract: 

To enhance management of aquatic systems, long-term monitoring programs are crucial. However, managers often lack sufficient guidance in decision-making. In this study, we analyzed nearshore electrofishing data from Lake Ontario spanning 18 years and over 100,000 caught fish to assess sampling designs for various coastal habitats. Using simulation, we evaluated precision of Catch Per Unit Effort (CPUE) for all species, piscivores, and specialist species, at different levels of electrofishing sampling effort. For overall CPUE in any habitat type, increased precision declined with additional electrofishing runs, particularly after reaching 30–40 runs. Adjustments in sampling effort, such as adding 10 runs per year for open-coast sites, increased precision of overall CPUE by 10%. Adding 8 runs per year for wetlands increased precision of specialist-species CPUE by 10%. However, additional runs in embayments did not increase precision for all species, piscivores, or specialist species. Our findings underscore the importance of considering community composition and abundance when evaluating CPUE precision, and illustrates a flexible approach to optimize sampling effort in aquatic monitoring programs.

Citation: Theis, S., Cartwright, L., Chreston, A., Coey, B., Graham, B., Little, D., Poesch, M. S., Portiss, R., Scott, R., Wallace, A., and J. L. W. Ruppert. (In Press) Balancing sampling effort against costs for nearshore fish communities in Toronto waterfront, Lake Ontario. Fisheries Management and Ecology.

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Theis S.*, Chin, A. T.M., Wallace, A., Cartwright L., Fortin M.J., Poesch, M.S. and Ruppert, J.L.W. (In Press) Complexity and spatial structuring of fish communities across urbanized watersheds and waterfronts. Urban Ecosystems.

*Lab members: Sebastian Theis, Jonathan Ruppert (former member) and Mark Poesch. Check out opportunities in the lab!

Theis S.*, Chin, A. T.M., Wallace, A., Cartwright L., Fortin M.J., Poesch, M.S. and Ruppert, J.L.W. (2025) Complexity and spatial structuring of fish communities across urbanized watersheds and waterfronts. Urban Ecosystems.

Abstract: 

Understanding the spatial structure and diversity of fish communities in urban environments is crucial for effective conservation and management. Our study investigates the complexity and spatial structuring of fish communities across urbanized watersheds and waterfronts in the Toronto region, identifying distinct groups based on sampling locations using modularity analysis and partial least square path modeling (PLS-PM). We evaluated the influence of environmental factors, including habitat, human impact, and species traits, on fish community composition. Our results reveal three distinct fish community groups. The first group, primarily located in major watersheds such as Humber and Rouge, is characterized by lower human impact and larger tracts of less developed land, where habitat variables like water quality play a significant role. These areas support species with intermediate tolerance levels. The second group includes diverse waterfront and nearshore habitats, where high species richness and variability are influenced by varied environmental conditions and riparian zones, with limited urban impact. The third group, encompassing some of the more urbanized areas, faces the constraints of urbanization and a high density of instream barriers, resulting in lower species diversity and a dominance of disturbance-tolerant species. Our findings highlight how different urban environments shape fish communities based on available habitat in interatom with species traits. This underscores the importance of tailored urban watershed management strategies based on urbanization levels and habitat constraints.

Citation: Theis S., Chin, A. T.M., Wallace, A., Cartwright L., Fortin M.J., Poesch, M.S. and Ruppert, J.L.W. (2025) Complexity and spatial structuring of fish communities across urbanized watersheds and waterfronts. Urban Ecosystems.

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Theis S.*, Cartwright L., Chreston A., Coey B., Graham B., Little D., Poesch M.S., Portiss R., Wallace A. and J. L. W. Ruppert (2024). A multi-metric index for assessing two decades of community responses to broad scale shoreline enhancement and restoration along the Toronto waterfront. Aquatic Conservation: Marine and Freshwater Ecosystems 34: e24141.

*Lab members: Sebastian Theis, Jonathan Ruppert (former member) and Mark Poesch. Check out opportunities in the lab!

Miller, M., Stevens, C. and M. S. Poesch. (In Press). Effectiveness of spawning substrate enhancement for adfluvial fish in a regulated sub-Arctic river. River Research and Applications.

Abstract:

This study was conducted to meet regulatory requirements under the Fisheries Act in Canada, specifically for a hydroelectric facility on the Yellowknife River in the Northwest Territories. The research focused on annual snorkel surveys of adfluvial fish and their spawning habitat below the facility. Initial observations of egg mortality, potentially due to overcrowding, prompted the investigation of natural and enhanced habitat for spawning Lake trout (Salvelinus namaycush), lake whitefish (Coregonus clupeaformis) and cisco (Coregonus artedi) from 2016 to 2019. The design and composition of the installed habitat were based on fish utilization of the natural channel below the hydro facility and design principles from previous habitat rehabilitation projects for anadromous fishes. Pre- and post-enhancement data on egg density and survival were collected using 1 m2 plots on both natural and artificially enhanced substrates. Three years of post-enhancement monitoring indicated higher egg densities and a greater proportion of live eggs in the artificially enhanced habitat compared to the natural habitat, with more pronounced trends observed for coregonids (lake whitefish and cisco) compared to lake trout. These findings suggest that habitat enhancement has the potential to enhance juvenile recruitment for adfluvial fish. A critical factor in the design was the substrate composition, providing adequate interstitial spaces for egg development and protection. This study represents the first documented attempt at habitat improvement in a regulated sub-Arctic river in Canada. The findings offer valuable guidance for stakeholders involved in new or existing development projects that require conservation actions to maintain fisheries productivity.

Citation: Miller, M., Stevens, C. and M. S. Poesch. (In Press). Effectiveness of spawning substrate enhancement for adfluvial fish in a regulated sub-Arctic river. River Research and Applications.

Also Read:

McPherson, M.*, Lewis, J.B., Cott, P.B., Baker, L.F., Mochnacz, N.J. Swanson, H.K., and S. Poesch. (2023) Habitat use by fluvial Arctic Grayling (Thymallus arcticus) across life stages in northern mountain streams. Environmental Biology of Fishes 106: 1001-1020.

*Lab members: Mark Poesch. Check out opportunities in the lab!

Pandit, S.*, Poesch, M. S., Kolasa, J., Pandit, L. K., Ruppert, J. L. W., and E. Enders (2024). Long-term evaluation of the impact of urbanization on native and non-native fish assemblages. Aquatic Invasions: 19(3): 345-360.

Abstract: 

Urbanization can homogenize species composition across aquatic ecosystems by introducing disturbance that can destroy the habitat of unique endemic or native species and/or create an alternative habitat for the few species able to adapt to these conditions. Here, we use a long-term decadal dataset (1971 to 2010) on the fish species presence in 16 subwatersheds within three watersheds in the Greater Toronto Area, Canada; and assessed whether fish communities have changed over time for three categories of species assemblages: (1) native species community only, (2) nonnative species community only, and (3) a combination of all species (all species). We considered three significant variables for which data exist: catchment area, distance to a species pool source, and percentage of urban cover (i.e., percent of the impervious area within a catchment) to determine whether these variables alter species richness. We used the nestedness metric to evaluate the degree of interdependence among site assemblages and site compositional degradation over time to contrast trends in native and non-native sets of species. Overall, nestedness temperatures (NTs, which is ‘heat of disorder’) for native fish is lower [T=11.01] than nonnative fish assemblages [24.47], indicating that native fish are more nested than non-native fish species assemblages. Among the four decadal scales, the native species community showed high nestedness during the 1970s, which declined later (the 2010s), and an opposite trend occurred for the non-native species community. Although total species richness increased over time, native richness decreased with urbanization, with non-native species richness increasing and overcompensating native losses. The study further suggests that the non-native fish communities become patchier (less predictable and less nested). This implies that further changes in fish communities are likely, and the patchiness may isolate communities making them more prone to perturbations.

Citation: Pandit, S., Poesch, M. S., Kolasa, J., Pandit, L. K., Ruppert, J. L. W., and E. Enders (2024). Long-term evaluation of the impact of urbanization on native and non-native fish assemblages. Aquatic Invasions: 19(3): 345-360.

Also Read:

Theis S.*, Cartwright L., Chreston A., Coey B., Graham B., Little D., Poesch M.S., Portiss R., Wallace A. and J. L. W. Ruppert (2024). A multi-metric index for assessing two decades of community responses to broad scale shoreline enhancement and restoration along the Toronto waterfront. Aquatic Conservation: Marine and Freshwater Ecosystems 34: e24141.

*Lab members: Shubha Pandit and Mark Poesch. Check out opportunities in the lab!

Theis S.*, Cartwright L., Chreston A., Coey B., Graham B., Little D., Poesch M.S., Portiss R., Wallace A. and J. L. W. Ruppert (2024). A multi-metric index for assessing two decades of community responses to broad scale shoreline enhancement and restoration along the Toronto waterfront. Aquatic Conservation: Marine and Freshwater Ecosystems 34: e24141.

Abstract:

The twin crises of climate change and biodiversity loss requires Notably, as one of the largest projects of its kind in the Great Lakes region (~500 hectares), extensive aquatic enhancement and restoration has been completed to support terrestrial and aquatic ecosystems with the intent of improving overall ecosystem health and biodiversity. Using twenty years of fish community data, we examined ecosystem responses in a spatio-temporal context across wetland and embayment ecotypes. Fish communities were assessed through a multi-metric index based on species life-history traits and habitat association. Generally, fish communities along the waterfront have transitioned from cool and coldwater pelagic species. Further, there are higher proportions of generalists and a higher proportion of native warmwater species, many of them piscivores, associated with cover and vegetation, that tend to meet community targets. Notably, these changes are more pronounced at Tommy Thompson Park compared to the rest of the waterfront, where communities approach natural reference levels. This result indicates the benefits and effectiveness of the decade long restoration efforts and subsequent monitoring of responses. This study provides important implications for large scale restoration and enhancement activities globally.

Citation: Theis S., Cartwright L., Chreston A., Coey B., Graham B., Little D., Poesch M.S., Portiss R., Wallace A. and J. L. W. Ruppert (2024). A multi-metric index for assessing two decades of community responses to broad scale shoreline enhancement and restoration along the Toronto waterfront. Aquatic Conservation: Marine and Freshwater Ecosystems 34: e24141.

Also Read:

Theis S.*, Cartwright L., Chreston A., Wallace A., Graham B., Coey B., Little D., Poesch M.S., Portiss R., and J. Ruppert (In Press). Nearshore fish community changes along the Toronto Waterfront in accordance with management and restoration goals: Insights from two decades of monitoring. PLos One.

*Lab members: Sebastian Theis, Mark Poesch. Check out opportunities in the lab!

Theis S.*, Cartwright L., Chreston A., Wallace A., Graham B., Coey B., Little D., Poesch M.S., Portiss R., and J. Ruppert (2024). Nearshore fish community changes along the Toronto Waterfront in accordance with management and restoration goals: Insights from two decades of monitoring. PLos One: 19(2): e0298333.

Abstract:

Aquatic habitat in the Greater Toronto Area has been subject to anthropogenic stressors. The subsequent aquatic habitat degradation that followed led to the Toronto and Region waterfront being listed as an Area of Concern in 1987. Thus, extensive shoreline and riparian habitat restoration have been implemented as part of the Toronto and Region Remedial Action Plan in conjunction with local stakeholders, ministries, and NGOs in an overall effort to increase fish, bird, and wildlife habitat. A key aspect of current fish habitat restoration efforts, monitored by Toronto and Region Conservation Authority, is to account for long-term community changes within the target ecosystem to better understand overall changes at a larger spatial scale. Here we use electrofishing data from the past 20 years with over 100,000 records and across 72km of coastline to show how declines and fluctuations in fish biomass and catch along the waterfront are driven by a few individual species across three main ecotypes, such as coastal wetlands, embayments, and open coast sites, with the remaining species showing a high level of stability. Using community traits and composition for resident species we demonstrate native warmwater species have become more dominant along the waterfront in recent years, suggesting that restoration efforts are functioning as intended. Additionally, piscivore and specialist species have increased in their relative biomass contribution, approaching existing restoration targets. Altogether this waterfront-wide evaluation allows us to detect overall changes along the waterfront and can be beneficial to understand community changes at an ecosystem level when implementing and monitoring restoration projects.

Citation: Theis S., Cartwright L., Chreston A., Wallace A., Graham B., Coey B., Little D., Poesch M.S., Portiss R., and J. Ruppert (2024). Nearshore fish community changes along the Toronto Waterfront in accordance with management and restoration goals: Insights from two decades of monitoring. PLos One: 19(2): e0298333.

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Theis, S.*  Castellanos D.A., Hamann A. and M.S. Poesch. (2022) Exploring the potential role of habitat banks in preserving freshwater biodiversity and imperiled species in the United States. Biological Conservation 273: 109700.

*Lab members: Sebastian Theis, Mark Poesch. Check out opportunities in the lab!

Theis S.* and M. S. Poesch. (2024). What makes a bank a bank? Differences and commonalities in credit calculation, application, and risks in mitigation banks targeting freshwater fish species and associated ecosystems. Environmental Management: 73(1): 199-212.

Abstract:

Mitigation banking is part of the ever-expanding global environmental market framework that aims to balance negative approved anthropogenic impacts versus third-party provided ecosystem benefits, sold in the form of credits. Given the need to conserve freshwater biodiversity and habitat, banking has received great traction in freshwater systems. While extensive reviews and studies have been conducted on evaluating if equivalency between impacts and offset can be achieved, there is almost no research being done on the way credits are being generated. Synthesizing banking data through cluster analyses from 26 banks in the United States generating credits for freshwater species and systems, we show two dominant approaches: removing barriers and targeting whole communities. Both address crucial freshwater conservation needs but come with their risks and caveats. Using common characteristics and management practices within these two groups, we showcase and conclude that credit generation via barrier removal can be at risk of granting credit generation for too large of an area, leading to over-crediting. Banks targeting whole freshwater communities and accounting for landscape-level interactions and influences can potentially be detrimental for species on an individual level and large-scale credit availability as well as transfer can incentivize non-compliance with the mitigation hierarchy.

Citation: Theis S. and M. S. Poesch. (2024). What makes a bank a bank? Differences and commonalities in credit calculation, application, and risks in mitigation banks targeting freshwater fish species and associated ecosystems. Environmental Management: 73(1): 199-212.

Also Read:

Theis S.*, and M.S. Poesch (2022) Assessing conservation and mitigation banking practices and associated gains and losses in the United States. Sustainability 14: 6652.

*Lab members: Sebastian Theis, Mark Poesch. Check out opportunities in the lab!

Theis, S.* and M. S. Poesch. (2024).  Mitigation bank applications for freshwater systems: Control mechanisms, project complexity, and caveats. PLOS One 19(2): e-292702.

Abstract:

Biodiversity and mitigation banking has become a popular alternative offsetting mechanism, especially for freshwater species and systems. Central to this increase in popularity is the need for sound control mechanisms to ensure offset functionality. Two commonly used mechanisms are monitoring requirements and staggered release of bank credits over time. We used data from 47 banks in the United States, targeting freshwater systems and species. Based on the 47 banks meeting our criteria we showed that control mechanisms generally scale with increased project complexity and that banks release most of their total credit amount within the first 3 years. We further showed that advance credits are common and can increase the potential for credit release without providing tangible ecological benefits. Physical and biological assessment criteria commonly used by banks let us identify three main bank types focusing on connectivity, physical aspects, and habitat and species and their application possibilities and caveats to provide different ecosystem benefits for freshwater species and systems affected by anthropogenic development.

Citation: Theis, S. and M. S. Poesch. (2024).  Mitigation bank applications for freshwater systems: Control mechanisms, project complexity, and caveats. PLOS One 19(2): e-292702.

Also Read:

Theis S.*, and M.S. Poesch (2022) Assessing conservation and mitigation banking practices and associated gains and losses in the United States. Sustainability 14: 6652.

*Lab members: Sebastian Theis, Mark Poesch. Check out opportunities in the lab!