Category Archives: Conservation of Freshwater Fishes

Freshwater fishes are among the most imperiled groups globally with rates of decline comparable to declines in tropical rainforest species. Research in the PoeschLab focuses on developing a better understanding of the mechanisms for the decline of freshwater organisms. This research has four main themes, including: 1) threats to freshwater species at risk, 2) stream augmentation and hydrologic alteration, 3) climate change impacts to freshwater fishes, and 4) the spread and impact of invasive species. To achieve our research goals we utilize a variety of expertise in the PoeschLab and the University of Alberta. This includes expertise in: movement ecology and telemetry, assessing foodwebs using stable isotope analysis, population genetics and environmental DNA (eDNA) and morphology and swim performance.

Veillard, M.F.*, Ruppert, J.L.W.*, Tierney, K., Watkinson, D., and M.S. Poesch. (2017) Comparative swimming and station-holding ability of the threatened Rocky Mountain Sculpin (Cottus sp.) from four hydrologically distinct rivers. Conservation Physiology 5: 1-12.

Abstract:

Hydrologic alterations, such as dams, culverts or diversions, can introduce new selection pressures on freshwater fishes, where they are required to adapt to novel environmental conditions. Our study investigated how species adapt to natural and altered stream flow, where we use the threatened Rocky Mountain Sculpin (Cottus sp.) as a model organism. We compared the swimming and station-holding performance of Rocky Mountain Sculpin from four different hydrologic regimes in Alberta and British Columbia, including the North Milk River, a system that experiences increased flows from a large-scale diversion. We measured the slip (Uslip) and failure (Uburst) velocities over three constant acceleration test trials. Uslipwas defined as the point at which individuals required the addition of bursting or swimming to maintain position. Uburst was defined as the point at which individuals were unable to hold position in the swimming chamber through swimming, bursting or holding techniques without fully or partially resting on the electrified back plate. We found individuals from the Flathead River in British Columbia (with the highest natural flow) failed at significantly higher Uburstvelocities than fish from the southern Albertan populations. However, there was no relationship between peak hydrologic flow from the natal river and Uburst or Uslip. Further, Uburst velocities decreased from 51.8 cm s−1 (7.2 BL s−1) to 45.6 cm s−1 (6.3 BL s−1) by the third consecutive test suggesting the use of anaerobic metabolism. Uslip was not different between trials suggesting the use of aerobic metabolism in station-holding behaviours (Uslip). Moreover, we found no significant differences in individuals from the altered North Milk River system. Finally, individual caudal morphological characteristics were related to both slip and failure velocities. Our study contributes to the conservation of Rocky Mountain Sculpin by providing the first documentation of swimming and station-holding abilities of this benthic fish.

Citation: Veillard, M.F.*, Ruppert, J.L.W.*, Tierney, K., Watkinson, D., and Poesch, M.S. 2017. Comparative swimming and station-holding ability of the threatened Rocky Mountain Sculpin (Cottus sp.) from four hydrologically distinct rivers. Conservation Physiology 5: 1-12.

Difference in Swim Performance Across Populations of Rocky Mountain Sculpin. Shown are Tukey contrasts (estimate +/- 95% confidence intervals) between rivers (top row) and constant acceleration trial (CAT) numbers (bottom row) for failure (Uburst) and slip (Uslip) velocities from linear effects model. Significant differences are noted in yellow; Rivers are abbreviated as: Flathead River (FH), St. Mary River (SM), Lee Creek (LC) and North Milk River (NM).

Also Read:

Rudolfsen, T.*, Watkinson, D. and Poesch, M.S. (2018) Morphological divergence of the Threatened Rocky Mountain sculpin (Cottus sp.) is driven by biogeography and flow regime. Aquatic Conservation: Marine and Freshwater Ecosystems 28: 78-86.

*Lab members: Marie Veillard, Jonathan Ruppert, Mark Poesch. Check out opportunities in the lab!

Thayer, D.*, Ruppert, J.L.W., Watkinson, D., Clayton, T. and M.S. Poesch. (2017) Identifying temporal bottlenecks for the conservation of large-bodied fishes: Lake Sturgeon (Acipenser fluvescens) show highly restricted movement and habitat-use overwinter. Global Ecology and Conservation 10: 194-205.

Abstract:

The relationship between species’ size and home range size has been well studied. In practice, home range may provide a good surrogate of broad spatial coverage needed for species conservation, however, many species can show restricted movement during critical life stages, such as breeding and over-wintering. This suggests the existence of either a behavioral or habitat mediated ‘temporal bottleneck,’ where restricted or sedentary movement can make populations more susceptible to harm during specific life stages. Here, we study over-winter movement and habitat use of Lake Sturgeon (Acipenser fulvescens), the largest freshwater fish in North America. We monitored over-winter movement of 86 fish using a hydro-acoustic receiver array in the South Saskatchewan River, Canada. Overall, 20 fish remained within our study system throughout the winter. Lake Sturgeon showed strong aggregation and sedentary movement over-winter, demonstrating a temporal bottleneck. Movement was highly restricted during ice-on periods (ranging from 0.9 km/day in November and April to 0.2 km/day in mid-November to mid-March), with Lake Sturgeon seeking deeper, slower pools. We also show that Lake Sturgeon have strong aggregation behavior, where distance to conspecifics decreased (from 575 to 313 m) in preparation for and during ice-on periods. Although the Lake Sturgeon we studied had access to 1100 kilometers of unfragmented riverine habitat, we show that during the over-winter period Lake Sturgeon utilized a single, deep pool (<0.1% of available habitat). The temporal discrepancy between mobile and sedentary behaviors in Lake Sturgeon suggest adaptive management is needed with more localized focus during periods of temporal bottlenecks, even for large-bodied species.

Citation: Thayer, D.*, Ruppert, J.L.W., Watkinson, D., Clayton, T. and M.S. Poesch. (2017) Identifying temporal bottlenecks for the conservation of large-bodied fishes: Lake Sturgeon (Acipenser fluvescens) show highly restricted movement and habitat-use overwinter. Global Ecology and Conservation 10: 194-205.

Monthly core (C) and range (R) extent kernel density maps for: A) November, B) December, C) January, D) February, E) March, and F) April. Black lines are core range (50% percentile), broken lines range (90th percentile) extent.

Also Read:

Miller, M., Stevens, C. and M. S. Poesch. (In Press). Effectiveness of Spawning Substrate Enhancement for Adfluvial Fish in a Regulated Sub-Arctic River. River Research and Applications.

*Lab members: Donnette Thayer, Jonathan Ruppert, Mark Poesch. Check out opportunities in the lab!

Pandit, S.N.*, Koriala, L., Maitland, B.M*, Poesch, M.S., and E. Enders. (2017) Climate change risks, extinction debt, and conservation implications for an endangered freshwater fish Carmine Shiner (Notropis percobromus). Science of the Total Environment 598: 1-11.

Abstract:

Climate change is affecting many freshwater species, particularly fishes. Predictions of future climate change suggest large and deleterious effects on species with narrow dispersal abilities due to limited hydrological connectivity. In turn, this creates the potential for population isolation in thermally unsuitable habitats, leading to physiological stress, species declines or possible extirpation. The current extent of many freshwater fish species’ spatio-temporal distribution patterns and their sensitivity to thermal impacts from climate change − critical information for conservation planning − are often unknown. Carmine shiner (Notropis percobromus) is an ecologically important species listed as threatened or imperilled nationally (Canada) and regionally (South Dakota, United States) due to its restricted range and sensitivity to water quality and temperature. This research aimed to determine the current distribution and spatio-temporal variability in projected suitable habitat for Carmine shiner using niche-based modeling approaches (MaxEnt, BIOCLIM, and DOMAIN models). Statistically downscaled, bias-corrected Global Circulation Models (GCMs) data was used to model the distribution of Carmine shiner in central North America for the period of 2041–2060 (2050s). Maximum mean July temperature and temperature variability were the main factors in determining Carmine shiner distribution. Patterns of projected habitat change by the 2050s suggest the spatial extent of the current distribution of Carmine shiner would shift north, with > 50% of the current distribution changing with future projections based on two Representative Concentrations Pathways for CO2 emissions. Whereas the southern extent of the distribution would become unsuitable for Carmine shiner, suitable habitats are predicted to become available further north, if accessible. Importantly, the majority of habitat gains for Carmine shiner would be in areas currently inaccessible due to dispersal limitations, suggesting current populations may face an extinction debt within the next half century. These results provide evidence that Carmine shiner may be highly vulnerable to a warming climate and suggest that management actions – such as assisted migration – may be needed to mitigate impacts from climate change and ensure the long-term persistence of the species.

Citation: Pandit, S.N.*, Koriala, L., Maitland, B.M*, Poesch, M.S., and E. Enders. (2017) Climate change risks, extinction debt, and conservation implications for an endangered freshwater fish Carmine Shiner (Notropis percobromus). Science of the Total Environment 598: 1-11.

Predicted Change in Carmine Shiner Distribution given Climate Change Scenarios (RCP 2.6 top; RCP8.5 bottom) across various thresholds

Also Read:

Poesch, M.S., Chavarie, L., Chu, C., Pandit, S.N.*, and W. Tonn. (2016) Climate change impacts on freshwater fishes: A Canadian perspective. Fisheries 41(7): 385-391.

*Lab members: Shubha Pandit, Bryan Maitland, Mark Poesch. Check out opportunities in the lab!

Ruppert, J.L.W.*, James, P.M.A., Taylor, R., Rudolfsen, T.*, Veillard, M.*, Davis, C., Watkinson, D. and Poesch, M.S. (2017) Riverscape genetic structure of a threatened and dispersal limited freshwater species, the Rocky Mountain Sculpin (Cottus sp.). Conservation Genetics 18: 925-937.

Abstract:

Understanding the movement ability and the spatial scale(s) of population genetic structure of species can together better ‘tune’ management objectives to prevent potential range contraction and population declines. We studied the Rocky Mountain Sculpin (Cottus sp.), a threatened species in Canada, to demonstrate the utility of using two complementary approaches to assess connectivity of a species. To do so, we used Passive Integrated Transponder (PIT) tags with a stationary tracking array (n = 223) to track movement and genetic data (n = 1,015) from nine microsatellite loci to assess genetic population structure. The PIT tag results indicated that Rocky Mountain Sculpin are sedentary; approximately 50% of individuals only moved a maximum distance of 10 meters (upstream or downstream) over a 5-month period. Genetic analyses indicated that at the spatial scale of our study area (5500 km2), watershed structure (river basins) is the main geographic feature influencing population genetic structure. We used the Bayesian clustering tool STRUCTURE, which suggested four distinct sub-populations of Rocky Mountain Sculpin in Canada. Genetic structure at finer spatial scales (within basins and sub-basins) appears to be influenced by fluvial distance (i.e., geographic distance along a river) and elevation change between sample locations (i.e., isolation-by-distance and isolation-by-environment). Combining movement and genetic analyses provides complimentary evidence of limited dispersal in Rocky Mountain Sculpin and highlights that both approaches together can provide broader insight into connectivity between populations that may ultimately help to aid future management decisions.

Citation: Ruppert, J.L.W.*, James, P.M.A., Taylor, R., Rudolfsen, T.*, Veillard, M.*, Davis, C., Watkinson, D. and Poesch, M.S. 2017. Riverscape genetic structure of a threatened and dispersal limited freshwater species, the Rocky Mountain Sculpin (Cottus sp.). Conservation Genetics 18: 925-937.

STRUCTURE results showing mean assignment of individuals into four clusters and sorted by geographic locatoins. Geographic locations are abbreviated as FH: Flathead River, LC: Lee Creek, STM: St Mary River and NM: North Milk River. 

Also Read:

Nelson-Chorney, H.*, Carli, C.M., Davis, C.S., Vinebrooke, R.D., Poesch, M.S., and M.K. Taylor (2019) Environmental DNA in lake sediment reveals biogeography of native genetic diversity. Frontiers in Ecology and Evolution 17: 313-318.

*Lab members: Jonathan Ruppert, Tyana Rudolfsen, Marie Veillard, Mark Poesch. Check out opportunities in the lab!

Camaclang, A.E., Curtis, J.M.R., Poesch, M.S., and M.A. Koops. (2017) Modelling the impact of poaching on metapopulation viability for data-limited species. Canadian Journal of Fisheries and Aquatic Science 74: 894-906.

Abstract:

We developed a spatially explicit simulation model of poaching behaviour to quantify the relative influence of the intensity, frequency, and spatial distribution of poaching on metapopulation viability. We integrated our model of poaching with a stochastic, habitat-based, spatially explicit population model, applied it to examine the impact of poaching on northern abalone (Haliotis kamtschatkana) metapopulation dynamics in Barkley Sound, British Columbia, Canada, and quantified model sensitivity to input parameters. While demographic parameters remained important in predicting extinction probabilities for northern abalone, our simulations indicate that the odds of extinction are twice as high when populations are subjected to poaching. Viability was influenced by poaching variables that affect the total number of individuals removed. Of these, poaching mortality was the most influential in predicting metapopulation viability, with each 0.1 increase in mortality rate resulting in 22.6% increase in the odds of extinction. By contrast, the location and spatial correlation of events were less important predictors of viability. When data are limited, simulation models of poaching combined with sensitivity analyses can be useful in informing management strategies and future research directions.

Citation: Camaclang, A.E., Curtis, J.M.R., Poesch, M.S., and M.A. Koops. 2017. Modelling the impact of poaching on metapopulation viability for data-limited species. Canadian Journal of Fisheries and Aquatic Science 74: 894-906.

Also Read:

Poesch, M.S. and D.A. Jackson (2012) Impact of species-specific dispersal and regional stochasticity on estimates of population viability in stream metapopulations. Landscape Ecology 27: 405-416.

Maitland, B.M.*, M.S. Poesch, Anderson, A.E., and S. Pandit*. (2016) Industrial road crossings drive changes in community structure and instream habitat for freshwater fishes in the Boreal forest. Freshwater Biology. 61: 1-18.

Abstract:

Stream crossing structures are an increasingly prevalent anthropogenic feature on North American riverscapes, particularly in watersheds affected by industrial resource development in sensitive boreal environments. If improperly managed, stream crossings have the potential to alter fish habitat and impede fish movement. This study assessed instream habitat characteristics and fish communities from 33 culverted, bridged and reference streams in an industrialising region of the boreal forest in west-central Alberta. Mixed-effects modelling and multivariate analysis were used to determine impacts of stream crossings at three scales: whole-stream scale, within-stream scale and the interaction of scales. Instream habitat characteristics such as mean depth, water velocity, percent fines, turbidity, water temperature and dissolved oxygen showed significant between-stream as well as within-stream differences among stream crossings. The majority of fish species exhibited significantly lower densities (n m−2) in upstream habitats as compared to downstream habitats, including a significant reduction in Slimy Sculpin densities in culverted streams. Multivariate tests corroborated these results, showing that fish assemblages differ as a function of stream type. This study suggests industrial stream crossings influence abiotic habitat characteristics in freshwater ecosystems, restrict biotic connectivity and impact fish community structure at the whole-stream and within-stream scales. Alterations to stream ecosystems associated with stream crossings may be driving large-scale changes in stream fish communities in the boreal forest. With expanded development expected in much of North America’s boreal region, mitigation measures which limit impacts from stream crossings are needed to ensure proper ecosystem function in freshwater systems.

Citation: Maitland, B.M.*, M.S. Poesch, Anderson, A.E., and S. Pandit*. (2016) Industrial road crossings drive changes in community structure and instream habitat for freshwater fishes in the Boreal forest. Freshwater Biology. 61: 1-18.

Figure – Barplot of fish community metrics of (a) fish density (number per m2) and (b) species richness across stream types and upstream and downstream locations (mean +/- SE). Sample sizes for stream types were: culvert (Cul) N = 11, bridge (Bri) N = 11, reference (Ref) = 11. Significant differences across stream types are identified by upper case letters, while significant differences between upstream and downstream reaches are identified by lower case letters.

Also Read:

Fischer, S.M.*, Ramaza, P., Simmons, S., Poesch, M.S. and M.A. Lewis. (2023) Boosting propagule transport models with individual-specific data from mobile apps. Journal of Applied Ecology 60(5): 934-949.

*Lab members: Bryan Maitland, Shubha Pandit, Mark Poesch. Check out opportunities in the lab!

Maitland, B.M.*, Anderson, A. and Poesch, M.S. (2016) Prioritising culvert removals to restore habitat for at-risk salmonids in the Boreal forest. Fisheries Management and Ecology 23: 489-502.

Abstract:

Stream crossing structures are an increasingly prevalent anthropogenic feature on North American riverscapes, particularly in watersheds affected by industrial resource development in sensitive boreal environments. If improperly managed, stream crossings have the potential to alter fish habitat and impede fish movement. This study assessed instream habitat characteristics and fish communities from 33 culverted, bridged and reference streams in an industrialising region of the boreal forest in west-central Alberta. Mixed-effects modelling and multivariate analysis were used to determine impacts of stream crossings at three scales: whole-stream scale, within-stream scale and the interaction of scales. Instream habitat characteristics such as mean depth, water velocity, percent fines, turbidity, water temperature and dissolved oxygen showed significant between-stream as well as within-stream differences among stream crossings. The majority of fish species exhibited significantly lower densities (n m−2) in upstream habitats as compared to downstream habitats, including a significant reduction in Slimy Sculpin densities in culverted streams. Multivariate tests corroborated these results, showing that fish assemblages differ as a function of stream type. This study suggests industrial stream crossings influence abiotic habitat characteristics in freshwater ecosystems, restrict biotic connectivity and impact fish community structure at the whole-stream and within-stream scales. Alterations to stream ecosystems associated with stream crossings may be driving large-scale changes in stream fish communities in the boreal forest. With expanded development expected in much of North America’s boreal region, mitigation measures which limit impacts from stream crossings are needed to ensure proper ecosystem function in freshwater systems.

Citation: Maitland, B.M.*, Anderson, A. and Poesch, M.S. (2016) Prioritising culvert removals to restore habitat for at-risk salmonids in the Boreal forest. Fisheries Management and Ecology 23: 489-502.

Site Locations of Assessed Stream Crossings, including (a) Simoneete, (b) Latronell and (c) Deep Valley watersheds in Alberta Canada.

Prioritization given: net habitat gain (a,d), number of barriers removed (c,f) and the mean cost per barrier (c,f) across Deep Valley and Latronell subwatersheds.

Also Read:

Medinski, N.A.*, Maitland, B.M.*, Jardine, T.D., Drake, D.A.R. and M.S. Poesch (2022) A catastrophic coal mine spill in the Athabasca River watershed induces isotopic niche shifts in stream biota including an endangered rainbow trout ecotype. Canadian Journal for Fisheries and Aquatic Sciences 79(8): 1321-1334.

*Lab members: Bryan Maitland, Mark Poesch. Check out opportunities in the lab!

Neufeld, K.R. (2016) Improving our ability to assess the impacts of hydrologic alteration on stream fishes: An interdisciplinary approach to assess the Threatened Western Silvery Minnow Hybognathus argyritis in Canada

Thesis title: Improving our ability to assess the impacts of hydrologic alteration on stream fishes: An interdisciplinary approach to assess the Threatened Western Silvery Minnow Hybognathus argyritis in Canada

Author: Kenton Neufeld

Abstract

Human induced hydrologic alteration is ubiquitous in North American riverscapes. These alterations have been shown to impact fishes by modifying habitats, influencing movement patterns and driving changes in community structure. Understanding these impacts is an essential first step for the conservation of fish in these systems. We use Western Silvery Minnow Hybognathus argyritis and the Milk River of southern Alberta as a model system to develop and apply an interdisciplinary approach to assess the impacts of hydrologic alteration on capture efficiency and habitat suitability of stream fishes. The capture efficiency of sampling gear is a key component of many fish research programs, and understanding the link between hydrology and capture efficiency is critical to accurately assessing the impacts of hydrologic alterations on fish. We measured seine net capture efficiency in the Milk River, and investigated the effects of flow, species, and habitat variables on capture efficiency using mixed effects models. Flow state was an important driver of capture efficiency, which increased ~5 % during augmented flow compared to natural flow. Habitat suitability assessments are commonly used to determine the impacts of hydrologic alteration on fishes, but often rely on poorly understood relationships between fish and their habitat. We used the swimming performance of Western Silvery Minnow to measure the cost of movement between habitat patches in the Milk River and incorporated this cost into a graph theoretic metric of habitat suitability (Equivalent Connected Area). Compared to augmented flow, the proportion of suitable area was ~ 475 % higher during natural flow, the mean cost of movement between habitat patches was ~ 13 % higher and Equivalent Connected Area increased ~ 0.119 (95% C.I. 0.109-0.130). By including flow as a variable in modelling capture efficiency and swimming performance as a mechanism defining habitat suitability, we show the utility and benefits of taking an interdisciplinary approach to assessing the impacts of hydrologic alteration on stream fishes.

Veillard, M. (2016) Investigating fine-scale movement patterns and comparative swimming performance of the newly identified and threatened Rocky Mountain Sculpin (Cottus sp.) across its Canadian distribution

Thesis Title: Investigating fine-scale movement patterns and comparative swimming performance of the newly identified and threatened Rocky Mountain Sculpin (Cottus sp.) across its Canadian distribution

Author: Marie Veillard

Abstract

Cumulative anthropogenic impacts to the riverscape, including hydrologic alteration, have contributed to an escalated number of freshwater fish species at risk in North America. Species dispersal is an important mechanism underlying many ecological processes. Understanding the scale at which species carry out their life history can inform both conservation actions and recovery potential. Our study used the recently-identified Rocky Mountain Sculpin (Cottus sp.), a species federally listed as threatened, to investigate the (1) fine-scale movement potential and (2) comparative swimming ability of adults throughout their restricted Canadian distribution. Rocky Mountain Sculpin are a small-bodied, cryptic benthic species that utilizes interstitial spaces for shelter. To assess the fine-scale movement potential of Rocky Mountain Sculpin, I conducted a mark-recapture study on Lee Creek, Alberta using Passive Integrated Transponder (PIT) and Visible Implant Elastomer (VIE) tags. I assessed the abiotic and biotic factors influencing movement using Boosted Regression Tree models. In this study I found that 89% of sculpins moved less than 30 meters, while a few individuals moved up to 240 meters. Biotic factors indicated sculpins moved from high to low abundances of fish due to intra- and inter- specific competition from congeners and benthic competitors. The most important abiotic factor contributing to movement was abundance of cobble substrate at destination transects. Interestingly, there was a strong interaction between biotic and abiotic components indicating the importance of focusing restoration efforts on both biotic and abiotic factors. To address the second objective, comparative fish swimming performance and recovery potential was assessed in a laboratory on individuals sourced from drastically different hydrologic regimes in Alberta and British Columbia, including the flow augmented, North Milk River. Permutational ANOVAs were used to compare swimming performance between rivers using two aspects of swimming ability: (1) slip velocity, the point at which fish slipped and transitioned into swimming and 2) failure velocity, the point at which fish could no longer hold position against the flow without resting. While we expected swimming ability to be correlated with natal hydrologic regimes, our study found there were no differences in failure or slip velocity between rivers. However, resting oxygen uptake prior to swim tests was significantly higher for fish from the augmented, North Milk River, indicating there may be a physiological response to flow augmentation. Over repeated exercise, fish failure velocity decreased from 7.45 ± 3.10 body lengths per second (BL s-1) in the first test to 6.18 ± 2.56 BL s-1 by the third test suggesting the use of anaerobic metabolism to power swimming performance of this small-bodied species. Linear mixed-effects models developed using body characteristics showed caudal morphology to influence both failure and slip velocities, while body height was negatively correlated to slip velocity, demonstrating morphological selection for benthic living. Taken together, these studies suggest that while large-scale flow augmentation may come at an energetic cost to sculpins, fine-scale developments may be equally as detrimental to this dispersal-limited species. Conservation for this species may then require both fine-scale and regional management.