Category Archives: Conservation of Freshwater Fishes

Freshwater fishes are among the most imperiled groups globally with rates of decline comparable to declines in tropical rainforest species. Research in the PoeschLab focuses on developing a better understanding of the mechanisms for the decline of freshwater organisms. This research has four main themes, including: 1) threats to freshwater species at risk, 2) stream augmentation and hydrologic alteration, 3) climate change impacts to freshwater fishes, and 4) the spread and impact of invasive species. To achieve our research goals we utilize a variety of expertise in the PoeschLab and the University of Alberta. This includes expertise in: movement ecology and telemetry, assessing foodwebs using stable isotope analysis, population genetics and environmental DNA (eDNA) and morphology and swim performance.

Nelson-Chorney, H.*, Carli, C.M., Davis, C.S., Vinebrooke, R.D., Poesch, M.S., and M.K. Taylor (2019) Environmental DNA in lake sediment reveals biogeography of native genetic diversity. Frontiers in Ecology and Evolution 17: 313-318.

Abstract: 

Understanding the historical distributions of species is vital to the conservation and restoration of native species, yet such information is often qualitative. We show that the paleolimnological history of threatened freshwater fishes can be reconstructed using species‐diagnostic markers amplified from environmental DNA deposited in lake sediments (lake sedDNA). This method was validated through the detection of lake sedDNA from non‐native trout (Yellowstone cutthroat trout, Oncorhynchus clarkii bouvieri), which corroborated historical records of human‐mediated introductions. We also discovered native trout (westslope cutthroat trout, Oncorhynchus clarkii lewisi) lake sedDNA that predated human‐mediated introductions of freshwater fishes in a watershed with high topographical relief. This unexpected result revealed that the westslope population was of native origin and requires immediate conservation protection. Our findings demonstrate that lake sedDNA can be used to determine the colonization history of freshwater fishes and the structure of ecosystems, aiding in the identification of native ranges, novel native diversity, and introductions of non‐native species. 

Citation: Nelson-Chorney, H., Carli, C.M., Davis, C.S., Vinebrooke, R.D., Poesch, M.S., and M.K. Taylor (2019) Environmental DNA in lake sediment reveals biogeography of native genetic diversity. Frontiers in Ecology and Evolution 17: 313-318.

Also Read: 

Poesch, M.S., Chavarie, L., Chu, C., Pandit, S.N.*, and W. Tonn. (2016) Climate change impacts on freshwater fishes: A Canadian perspective. Fisheries 41(7): 385-391.

*Lab members:   Hedin Nelson-Chorney, Mark Poesch. Check out opportunities in the lab!

Nelson-Chorney, H. (2019) Paleolimnological reconstruction of  Westslope Cutthroat Trout (Oncorhynchus clarki lewisi)  in alpine lakes using a next-generation sequencing platform.

Thesis Title: Paleolimnological Reconstruction of  Westslope Cutthroat Trout (Oncorhynchus clarki lewisi)  in Alpine Lakes using a Next-Generation Sequencing Platform (link; co-supervisors: R. Vinebrooke, M. Taylor)

Author: Hedin Nelson-Chorney

Abstract

Understanding historical species distributions is vital to the conservation and restoration of native species, yet such information is often qualitative.  Here, we show that the paleolimnological history of threatened freshwater fishes can be reconstructed using species diagnostic markers amplified from environmental DNA deposited in lake sediments (lake sediment DNA).  This method was validated through the detection of lake sediment DNA from non-native trout (Yellowstone cutthroat trout; Oncorhynchus clarkii bouvieri), which corroborated historical records of human-mediated introductions.  Moreover, we discovered native trout (westslope cutthroat trout; Oncorhynchus clarkii lewisi) lake sediment DNA that predated human-mediated introductions of freshwater fishes in a watershed with high topographical relief.  This unexpected result revealed that the population was of native origin and requires immediate conservation protection.  Our findings demonstrate that lake sediment DNA can be used to determine the colonization history of freshwater fishes and the structure of ecosystems, aiding in the identification of native ranges, novel native diversity, and introductions of non-native species.

How to deal with this self-cloning invasive carp (Magazine: Cottage Life)

PoeschLab member Jesse Shirton interviewed on our research on Prussian Carp. Link to article: ‘Cottage Life’

Also Read:

Ruppert, J.L.W.*, Docherty,C.*, Rudolfsen, T.*, Neufeld, K.*, Hamilton, K.*, MacPherson, L. and M.S. Poesch. (2017) Native North American freshwater species get out of the way: Prussian Carp (Carassius gibelio) establishment impacts both fish and macroinvertebrate communities. Royal Society Open Science 4: 170400.

Rudolfsen, T.*, Ruppert, J.W.R.*, Davis, C., Taylor, R., Watkinson, D. and M.S. Poesch (2019) Habitat use and hybridization between the Rocky Mountain Sculpin (Cottus sp.) and Slimy Sculpin (Cottus cognatus). Freshwater Biology 64(3): 391-404.

Abstract: 

Anthropogenic factors such as land-use change, pollution and climate change, can cause fragmentation and reduce the amount of habitat by altering preferred conditions. This process can also bring about novel species interactions and, in some cases, create or alter levels of hybridization between closely related species. We assessed the threat of hybridization to persistence of the Rocky Mountain Sculpin (Cottus sp.) and the Slimy Sculpin (Cottus cognatus) in the Flathead River drainage, British Columbia, Canada. Using 731 genetic samples, 10 polymorphic microsatellite loci and mitochondrial cytochrome C oxidase sequences, we assessed: (1) if there are differences in the distribution of Rocky Mountain Sculpin between contemporary and historical (35 years ago) records, (2) if hybridization is symmetrical in terms of sex specific parental contributions, and (3) if habitat preferences contribute to the distribution of pure parental and hybrid populations. We identified three hybrid locations and found that Rocky Mountain Sculpin have a distribution (1200 – 1902 m) that far exceeds the range limit reported 35 years ago (1200 – 1372 m). Additionally, hybrid mating appears to involve similar proportions of parents of both sexes from each species. Lastly, elevation, water conductivity, turbidity, and dissolved oxygen are significant factors predicting the presence of parental species. Only elevation was significant to hybrid presence. The contrasting associations of parental species with different habitat types appears to influence the extent and distribution of hybridization.

Citation: Rudolfsen, T.*, Ruppert, J.W.R.*, Davis, C., Taylor, R., Watkinson, D. and M.S. Poesch (2019) Habitat use and hybridization between the Rocky Mountain Sculpin (Cottus sp.) and Slimy Sculpin (Cottus cognatus). Freshwater Biology 64(3): 391-404.

Also Read:

Ruppert, J.L.W.*, James, P.M.A., Taylor, R., Rudolfsen, T.*, Veillard, M.*, Davis, C., Watkinson, D. and Poesch, M.S. (2017) Riverscape genetic structure of a threatened and dispersal limited freshwater species, the Rocky Mountain Sculpin (Cottus sp.). Conservation Genetics 18: 925-937.

*Lab members:   Tyana Rudolfsen,  Jonathan Ruppert, Mark Poesch. Check out opportunities in the lab!