Tag Archives: Resource Development

Hambrook J., Kimmel N., Robinson R., Foster D., Poesch M.S. and P. Hanington. (In Press) Development, validation and implementation of eDNA-focused qPCR assays to detect and distinguish between Goldfish (Carassius auratus) and Prussian Carp (Carassius gibelio). Environmental DNA.

Abstract: 

The ability to accurately detect harmful aquatic invasive species in a species-specific manner is crucial to monitoring and management efforts. The Canadian province of Alberta currently harbors North America’s only invasive Prussian Carp populations, in addition to invasive Goldfish populations. The ability to quickly and accurately distinguish between these phenotypically similar fish, while also determining their presence in various waterbodies, is important in tracking invasions. In this work, we develop a cytochrome B–based assay, as well as an ND2-based assay to distinguish between these two fish. The 84-bp-long CytB assay featured a limit of detection of 5.8 and 4.8 copies/sample for Prussian Carp and Goldfish, respectively, while the 95-bp-long ND2 assay featured LODs of 6.3 and 1.6 copies/sample, respectively. We demonstrate that each of these assays fails to amplify these markers in closely related fish species common to Alberta. They also fail to amplify key invasive carp species, apart from the Goldfish ND2 assay, which cross-reacts with Common Carp. We then implement these assays and find 13 Goldfish and 47 Prussian Carp environmental DNA detection events throughout the Canadian province of Alberta. Finally, we show that assays broadly agree with visual observation data gathered from various reporting mechanisms, highlighting their validity in a monitoring program.

Citation: Hambrook J., Kimmel N., Robinson R., Foster D., Poesch M.S. and P. Hanington. (In Press) Development, validation and implementation of eDNA-focused qPCR assays to detect and distinguish between Goldfish (Carassius auratus) and Prussian Carp (Carassius gibelio). Environmental DNA. DOI: http://dx.doi.org/10.1002/edn3.70092.

Also Read:

Veilleux, H., McPherson, M.*, Cott, P., Poesch, M., S., Glover, C., and G. Goss. (2025) Environmental DNA as a tool to detect Arctic grayling and their habitat preferences in the Northwest Territories, Canada. Arctic Science 11: 1-12.

*Lab members: Mark Poesch. Check out opportunities in the lab!

Veilleux, H., McPherson, M.*, Cott, P., Poesch, M., S., Glover, C., and G. Goss. (2025) Environmental DNA as a tool to detect Arctic grayling and their habitat preferences in the Northwest Territories, Canada. Arctic Science 11: 1-12.

Abstract: 

Environmental DNA (eDNA) assays represent a non-invasive approach for biomonitoring. To assess Arctic grayling (Thymallus arcticus) populations in the Little Nahanni watershed of Northwest Territories (NWT), Canada, an eDNA assay that has been previously validated for use in fish of the Beringia lineage was used in conjunction with traditional survey methods (i.e., electrofishing). Forty-six 100-metre reaches of streams were assessed in August 2015. The assay successfully detected Arctic grayling of the Nahanni lineage, with an eDNA signal recorded at each of the 17 sites in which Arctic grayling were observed by traditional fish surveys, but also at 3 of the 29 sites where Arctic grayling were not observed. The presence of eDNA was related to habitat metrics via Random Forest and correlation analyses. Riffles and water temperature were identified as being predictive of Arctic grayling eDNA abundance; however, no significant relationship between eDNA abundance and biomass proxies (fish abundance and fork length metrics) could be established. The high congruence between traditional approaches and eDNA surveys suggests adoption of the latter method will enhance the temporal and spatial acuity of biomonitoring, thereby improving field assessment of Arctic grayling populations and contributing towards more effective conservation management of this species.

Citation: Veilleux, H., McPherson, M., Cott, P., Poesch, M., S., Glover, C., and G. Goss. (2025) Environmental DNA as a tool to detect Arctic grayling and their habitat preferences in the Northwest Territories, Canada. Arctic Science 11: 1-12.

Also Read:

McPherson, M.*, Lewis, J.B., Cott, P.B., Baker, L.F., Mochnacz, N.J. Swanson, H.K., and S. Poesch. (2023) Habitat use by fluvial Arctic Grayling (Thymallus arcticus) across life stages in northern mountain streams. Environmental Biology of Fishes 106: 1001-1020.

*Lab members: Morag McPherson and Mark Poesch. Check out opportunities in the lab!

Miller, M., Stevens, C. and M. S. Poesch. (2025). Effectiveness of spawning substrate enhancement for adfluvial fish in a regulated sub-Arctic river. River Research and Applications 41(2): 412-425.

Abstract:

This study was conducted to meet regulatory requirements under the Fisheries Act in Canada, specifically for a hydroelectric facility on the Yellowknife River in the Northwest Territories. The research focused on annual snorkel surveys of adfluvial fish and their spawning habitat below the facility. Initial observations of egg mortality, potentially due to overcrowding, prompted the investigation of natural and enhanced habitat for spawning Lake trout (Salvelinus namaycush), lake whitefish (Coregonus clupeaformis) and cisco (Coregonus artedi) from 2016 to 2019. The design and composition of the installed habitat were based on fish utilization of the natural channel below the hydro facility and design principles from previous habitat rehabilitation projects for anadromous fishes. Pre- and post-enhancement data on egg density and survival were collected using 1 m2 plots on both natural and artificially enhanced substrates. Three years of post-enhancement monitoring indicated higher egg densities and a greater proportion of live eggs in the artificially enhanced habitat compared to the natural habitat, with more pronounced trends observed for coregonids (lake whitefish and cisco) compared to lake trout. These findings suggest that habitat enhancement has the potential to enhance juvenile recruitment for adfluvial fish. A critical factor in the design was the substrate composition, providing adequate interstitial spaces for egg development and protection. This study represents the first documented attempt at habitat improvement in a regulated sub-Arctic river in Canada. The findings offer valuable guidance for stakeholders involved in new or existing development projects that require conservation actions to maintain fisheries productivity.

Citation: Miller, M., Stevens, C. and M. S. Poesch. (2025). Effectiveness of spawning substrate enhancement for adfluvial fish in a regulated sub-Arctic river. River Research and Applications 41(2): 412-425.

Also Read:

McPherson, M.*, Lewis, J.B., Cott, P.B., Baker, L.F., Mochnacz, N.J. Swanson, H.K., and S. Poesch. (2023) Habitat use by fluvial Arctic Grayling (Thymallus arcticus) across life stages in northern mountain streams. Environmental Biology of Fishes 106: 1001-1020.

*Lab members: Mark Poesch. Check out opportunities in the lab!

Pandit, S.*, Poesch, M. S., Kolasa, J., Pandit, L. K., Ruppert, J. L. W., and E. Enders (2024). Long-term evaluation of the impact of urbanization on native and non-native fish assemblages. Aquatic Invasions: 19(3): 345-360.

Abstract: 

Urbanization can homogenize species composition across aquatic ecosystems by introducing disturbance that can destroy the habitat of unique endemic or native species and/or create an alternative habitat for the few species able to adapt to these conditions. Here, we use a long-term decadal dataset (1971 to 2010) on the fish species presence in 16 subwatersheds within three watersheds in the Greater Toronto Area, Canada; and assessed whether fish communities have changed over time for three categories of species assemblages: (1) native species community only, (2) nonnative species community only, and (3) a combination of all species (all species). We considered three significant variables for which data exist: catchment area, distance to a species pool source, and percentage of urban cover (i.e., percent of the impervious area within a catchment) to determine whether these variables alter species richness. We used the nestedness metric to evaluate the degree of interdependence among site assemblages and site compositional degradation over time to contrast trends in native and non-native sets of species. Overall, nestedness temperatures (NTs, which is ‘heat of disorder’) for native fish is lower [T=11.01] than nonnative fish assemblages [24.47], indicating that native fish are more nested than non-native fish species assemblages. Among the four decadal scales, the native species community showed high nestedness during the 1970s, which declined later (the 2010s), and an opposite trend occurred for the non-native species community. Although total species richness increased over time, native richness decreased with urbanization, with non-native species richness increasing and overcompensating native losses. The study further suggests that the non-native fish communities become patchier (less predictable and less nested). This implies that further changes in fish communities are likely, and the patchiness may isolate communities making them more prone to perturbations.

Citation: Pandit, S., Poesch, M. S., Kolasa, J., Pandit, L. K., Ruppert, J. L. W., and E. Enders (2024). Long-term evaluation of the impact of urbanization on native and non-native fish assemblages. Aquatic Invasions: 19(3): 345-360.

Also Read:

Theis S.*, Cartwright L., Chreston A., Coey B., Graham B., Little D., Poesch M.S., Portiss R., Wallace A. and J. L. W. Ruppert (2024). A multi-metric index for assessing two decades of community responses to broad scale shoreline enhancement and restoration along the Toronto waterfront. Aquatic Conservation: Marine and Freshwater Ecosystems 34: e24141.

*Lab members: Shubha Pandit and Mark Poesch. Check out opportunities in the lab!

Theis S.*, Cartwright L., Chreston A., Coey B., Graham B., Little D., Poesch M.S., Portiss R., Wallace A. and J. L. W. Ruppert (2024). A multi-metric index for assessing two decades of community responses to broad scale shoreline enhancement and restoration along the Toronto waterfront. Aquatic Conservation: Marine and Freshwater Ecosystems 34: e24141.

Abstract:

The twin crises of climate change and biodiversity loss requires Notably, as one of the largest projects of its kind in the Great Lakes region (~500 hectares), extensive aquatic enhancement and restoration has been completed to support terrestrial and aquatic ecosystems with the intent of improving overall ecosystem health and biodiversity. Using twenty years of fish community data, we examined ecosystem responses in a spatio-temporal context across wetland and embayment ecotypes. Fish communities were assessed through a multi-metric index based on species life-history traits and habitat association. Generally, fish communities along the waterfront have transitioned from cool and coldwater pelagic species. Further, there are higher proportions of generalists and a higher proportion of native warmwater species, many of them piscivores, associated with cover and vegetation, that tend to meet community targets. Notably, these changes are more pronounced at Tommy Thompson Park compared to the rest of the waterfront, where communities approach natural reference levels. This result indicates the benefits and effectiveness of the decade long restoration efforts and subsequent monitoring of responses. This study provides important implications for large scale restoration and enhancement activities globally.

Citation: Theis S., Cartwright L., Chreston A., Coey B., Graham B., Little D., Poesch M.S., Portiss R., Wallace A. and J. L. W. Ruppert (2024). A multi-metric index for assessing two decades of community responses to broad scale shoreline enhancement and restoration along the Toronto waterfront. Aquatic Conservation: Marine and Freshwater Ecosystems 34: e24141.

Also Read:

Theis S.*, Cartwright L., Chreston A., Wallace A., Graham B., Coey B., Little D., Poesch M.S., Portiss R., and J. Ruppert (In Press). Nearshore fish community changes along the Toronto Waterfront in accordance with management and restoration goals: Insights from two decades of monitoring. PLos One.

*Lab members: Sebastian Theis, Mark Poesch. Check out opportunities in the lab!

Theis S.*, Cartwright L., Chreston A., Wallace A., Graham B., Coey B., Little D., Poesch M.S., Portiss R., and J. Ruppert (2024). Nearshore fish community changes along the Toronto Waterfront in accordance with management and restoration goals: Insights from two decades of monitoring. PLos One: 19(2): e0298333.

Abstract:

Aquatic habitat in the Greater Toronto Area has been subject to anthropogenic stressors. The subsequent aquatic habitat degradation that followed led to the Toronto and Region waterfront being listed as an Area of Concern in 1987. Thus, extensive shoreline and riparian habitat restoration have been implemented as part of the Toronto and Region Remedial Action Plan in conjunction with local stakeholders, ministries, and NGOs in an overall effort to increase fish, bird, and wildlife habitat. A key aspect of current fish habitat restoration efforts, monitored by Toronto and Region Conservation Authority, is to account for long-term community changes within the target ecosystem to better understand overall changes at a larger spatial scale. Here we use electrofishing data from the past 20 years with over 100,000 records and across 72km of coastline to show how declines and fluctuations in fish biomass and catch along the waterfront are driven by a few individual species across three main ecotypes, such as coastal wetlands, embayments, and open coast sites, with the remaining species showing a high level of stability. Using community traits and composition for resident species we demonstrate native warmwater species have become more dominant along the waterfront in recent years, suggesting that restoration efforts are functioning as intended. Additionally, piscivore and specialist species have increased in their relative biomass contribution, approaching existing restoration targets. Altogether this waterfront-wide evaluation allows us to detect overall changes along the waterfront and can be beneficial to understand community changes at an ecosystem level when implementing and monitoring restoration projects.

Citation: Theis S., Cartwright L., Chreston A., Wallace A., Graham B., Coey B., Little D., Poesch M.S., Portiss R., and J. Ruppert (2024). Nearshore fish community changes along the Toronto Waterfront in accordance with management and restoration goals: Insights from two decades of monitoring. PLos One: 19(2): e0298333.

Also Read:

Theis, S.*  Castellanos D.A., Hamann A. and M.S. Poesch. (2022) Exploring the potential role of habitat banks in preserving freshwater biodiversity and imperiled species in the United States. Biological Conservation 273: 109700.

*Lab members: Sebastian Theis, Mark Poesch. Check out opportunities in the lab!

Theis S.* and M. S. Poesch. (2024). What makes a bank a bank? Differences and commonalities in credit calculation, application, and risks in mitigation banks targeting freshwater fish species and associated ecosystems. Environmental Management: 73(1): 199-212.

Abstract:

Mitigation banking is part of the ever-expanding global environmental market framework that aims to balance negative approved anthropogenic impacts versus third-party provided ecosystem benefits, sold in the form of credits. Given the need to conserve freshwater biodiversity and habitat, banking has received great traction in freshwater systems. While extensive reviews and studies have been conducted on evaluating if equivalency between impacts and offset can be achieved, there is almost no research being done on the way credits are being generated. Synthesizing banking data through cluster analyses from 26 banks in the United States generating credits for freshwater species and systems, we show two dominant approaches: removing barriers and targeting whole communities. Both address crucial freshwater conservation needs but come with their risks and caveats. Using common characteristics and management practices within these two groups, we showcase and conclude that credit generation via barrier removal can be at risk of granting credit generation for too large of an area, leading to over-crediting. Banks targeting whole freshwater communities and accounting for landscape-level interactions and influences can potentially be detrimental for species on an individual level and large-scale credit availability as well as transfer can incentivize non-compliance with the mitigation hierarchy.

Citation: Theis S. and M. S. Poesch. (2024). What makes a bank a bank? Differences and commonalities in credit calculation, application, and risks in mitigation banks targeting freshwater fish species and associated ecosystems. Environmental Management: 73(1): 199-212.

Also Read:

Theis S.*, and M.S. Poesch (2022) Assessing conservation and mitigation banking practices and associated gains and losses in the United States. Sustainability 14: 6652.

*Lab members: Sebastian Theis, Mark Poesch. Check out opportunities in the lab!

Theis, S.* and M. S. Poesch. (2024).  Mitigation bank applications for freshwater systems: Control mechanisms, project complexity, and caveats. PLOS One 19(2): e-292702.

Abstract:

Biodiversity and mitigation banking has become a popular alternative offsetting mechanism, especially for freshwater species and systems. Central to this increase in popularity is the need for sound control mechanisms to ensure offset functionality. Two commonly used mechanisms are monitoring requirements and staggered release of bank credits over time. We used data from 47 banks in the United States, targeting freshwater systems and species. Based on the 47 banks meeting our criteria we showed that control mechanisms generally scale with increased project complexity and that banks release most of their total credit amount within the first 3 years. We further showed that advance credits are common and can increase the potential for credit release without providing tangible ecological benefits. Physical and biological assessment criteria commonly used by banks let us identify three main bank types focusing on connectivity, physical aspects, and habitat and species and their application possibilities and caveats to provide different ecosystem benefits for freshwater species and systems affected by anthropogenic development.

Citation: Theis, S. and M. S. Poesch. (2024).  Mitigation bank applications for freshwater systems: Control mechanisms, project complexity, and caveats. PLOS One 19(2): e-292702.

Also Read:

Theis S.*, and M.S. Poesch (2022) Assessing conservation and mitigation banking practices and associated gains and losses in the United States. Sustainability 14: 6652.

*Lab members: Sebastian Theis, Mark Poesch. Check out opportunities in the lab!

McPherson, M.*, Lewis, J.B., Cott, P.B., Baker, L.F., Mochnacz, N.J. Swanson, H.K., and S. Poesch. (2023) Habitat use by fluvial Arctic Grayling (Thymallus arcticus) across life stages in northern mountain streams. Environmental Biology of Fishes 106: 1001-1020.

Abstract:

Northern aquatic ecosystems face increasing pressures from climate change and natural resource development.  The Arctic Grayling (Thymallus arcticus) is a widely distributed, northern freshwater fish which can be vulnerable to such pressures. There remains a paucity of information on life stage requirements through most of the species’ range to reliably map and manage habitat to protect populations into the future. We sought to characterize fluvial Arctic Grayling distribution among mountain streams and determine habitat characteristics that habitat use across life stages. Sampling was conducted at 183 sites across the Little Nahanni River watershed to collect information on fish distribution and reach-scale habitat parameters. Arctic Grayling were collected for biological analyses of age, size, weight, and reproductive development. Based on age and size-classes there were four distinct post-emergence life stages: YOY, juvenile, sub-adult and adult. YOY Arctic Grayling were found exclusively in low elevation (<1000 m) streams, flat-water habitat dominated by silty-sand substrate with average water temperatures >10oC. Similarly, juvenile Arctic Grayling occupied low elevation, warm water stream habitat, but associated strongly with run habitats. Sub-adult Arctic Grayling, the most widely distributed life-stage, were found associated with riffle, pool, and cascade-boulder habitats. Adults occupied high elevation (>1200 m) habitats that were cold (mean stream temperature = 7oC), and had higher proportions of pool and boulder habitat. The dynamic nature of Arctic Grayling habitat use in mountain streams highlights the need to consider habitat complexes at the watershed scale when defining species life stage requirements, managing habitats, monitoring populations, and assessing potential impacts. Keywords: Climate Change; Water Stress; Biodiversity; Preservation.

Citation: McPherson, M., Lewis, J.B., Cott, P.B., Baker, L.F., Mochnacz, N.J. Swanson, H.K., and S. Poesch. (2023) Habitat use by fluvial Arctic Grayling (Thymallus arcticus) across life stages in northern mountain streams. Environmental Biology of Fishes 106: 1001-1020. 

Also Read:

Pandit, S.N.*, Koriala, L., Maitland, B.M*, Poesch, M.S., and E. Enders. (2017) Climate change risks, extinction debt, and conservation implications for an endangered freshwater fish Carmine Shiner (Notropis percobromus). Science of the Total Environment 598: 1-11.

*Lab members: Morag McPherson and Mark Poesch. Check out opportunities in the lab!

Theis, S.*, Ruppert, J. L. W. and M. S. Poesch. (2023) Coarse woody habitat use by local fish species and structural integrity of enhancements over time in a shallow northern boreal lake assessed in a Bayesian modeling approach. Ecological Solutions and Evidence 4(2): e12200.

Abstract:

  1. The introduction of coarse woody habitat has been a widely adopted management practice for restoring and enhancing freshwater aquatic ecosystems. Although responses of aquatic fish and invertebrate communities have largely been documented for lotic systems, benefits for lentic ecosystems have been mostly unevaluated.
  2. We tested the responses of fish populations to coarse woody habitat structures through a Bayesian modeling approach in a northern boreal lake in Alberta, Canada by enhancing a stretch of littoral zone with low structural complexity through introduction of coarse wood bundles and whole tree structures. The study site was split into three treatments, a Spaced treatment (structures 30 m apart), a Clustered treatment (structures 15 m apart), and an unaltered area (Control).
  3. Catch per unit effort and Catch per unit area data were collected over 2 years and posterior model predictions showed an increase in habitat use of the enhanced areas by spottail shiner – Notropis hudsonius; northern pike – Esox lucius; white sucker – Catostomus commersonii; brook stickleback – Culaea inconstans. No probable effect on overall fish condition, measured in Relative Weight, was linked to the enhancements.
  4. Across the two-year study, wood bundles degraded faster compared to the whole tree drops, coinciding with leveling off catch per unit effort and catch per unit area predictions near wood bundles, although catch predictions increased near the whole tree structures. Structural degradation set in as early as 1 week post construction for wood bundles and was mostly related to anchoring aspects.
  5. Results from our study provide evidence for the benefits provided by coarse woody habitat within northern boreal lake systems.  They furthermore highlight the short-lived nature of wood bundles built with biodegradable substances.  Methodologically our results offer evidence on the feasibility and utility of predictive modeling frameworks in addressing pseudoreplication and providing informative value for ecological studies.

Citation: Theis, S., Ruppert, J. L. W. and M. S. Poesch. (2023) Coarse woody habitat use by local fish species and structural integrity of enhancements over time in a shallow northern boreal lake assessed in a Bayesian modeling approach. Ecological Solutions and Evidence 4(2): e12200.

Also Read:

Theis, S.*, Ruppert, J.*, Shirton, J.* and M.S. Poesch (2022) Measuring beta diversity components and beneficial effects of coarse woody habitat introduction on invertebrate and macrophyte communities in a shallow northern boreal lake: implications for offsetting. Aquatic Ecology 56: 793-814.

*Lab members: Sebastian Theis, Jonathan Ruppert and Mark Poesch. Check out opportunities in the lab!